GSNAP - Genomic Short-read Nucleotide Alignment Program Tool name | GSNAP - Genomic Short-read Nucleotide Alignment Program |
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URL | http://research-pub.gene.com/gmap/ |
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Important features | 1. GSNAP is Genomic Short-read Nucleotide Alignment Program.
2. It can align paired-end and single-end data.
3. It can be used to detect splicing. |
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Citations | Wu TD, Nacu S. Fast and SNP tolerant detection of complex variants and splicing in short reads. Bioinformatics. 2010 Apr 1;26(7):873-81. Epub 2010 Feb
10. PubMed PMID: 20147302; PubMed Central PMCID: PMC2844994. |
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Year of publication | 2010 |
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Rank by usage frequency | 100 |
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Comments | |
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Function | RNA seq alignment, Bisulphite mapping |
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Category | Free, Downloadable |
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License | |
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Status | |
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Input file format | FASTA, FASTQ |
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Output file format | SAM, FASTA |
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Operating system | Unix, Cygwin on Windows |
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Operating language | C, Perl |
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Platform | |
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Maintained by | Genentech |
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Downloadable file format | |
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Submission file format | |
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